Scaffold Ga0209085

Basic Information
Taxon OID	3300027741 Open in IMG/M
Scaffold ID	Ga0209085_1001712 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027741 Open in IMG/M

Scaffold ID

Ga0209085_1001712 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13144
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (76.67%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

13144

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (76.67%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007363	Metagenome / Metatranscriptome	352	Y
F015208	Metagenome / Metatranscriptome	256	Y
F017484	Metagenome / Metatranscriptome	240	Y
F019325	Metagenome / Metatranscriptome	230	Y
F037030	Metagenome / Metatranscriptome	168	Y
F080046	Metagenome / Metatranscriptome	115	Y
F095359	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100171210	F095359	GGAGG	MTIKIGGLGQEISCYCPVCSEKMTHMCIATLGGMHRKGTIRYAWQCNSCELELKSDANGYAKLLKEMENV
Ga0209085_100171211	F007363	GGA	MRSYSITDLLVDQYYAPISLRRRFNGGIINYATKREDTYPASGWQDYAIRYRPANSLQDSWATVTVRVED
Ga0209085_100171212	F080046	AGGAG	MSLSLANKLAQDKFFLPPSKYINHKVVEIISLNDETKTMSVTLQKYGISRSANAVKGNLITLELPYAEFKNLNGWGNNK
Ga0209085_100171213	F019325	AGGTGG	MTTLNETLFSTIVHEFHNGGVQSSYGLDAYTRKELLKFLFSSKGCYCINCISKENK
Ga0209085_100171215	F017484	AGGAG	MSIEIFEMNENGAGWVSLENATPSTKIDLEWAIANNATIQMQCFKCHTPIPKGNVCVNHKNVKGGIYLG
Ga0209085_100171226	F037030	AGGAGG	MNNENIARINTVWTMIFVMIITLIFGEISPAQASMKEMIVYNKNILYINKYNNLVNIKDMINIDYNNILKKRMSKTLYLINDLSSRSTFLMPEYSQELNLKTTRVDKRVIISRLANALKSTETGGAGAYYRKSRSSSACGAYQYMPSTWNNYKGYKDACKAPEWVQDQKMILELNATYNKYHDWEKAVAAHLLPSRAGNKKTWNKRVPGNPTVRQYVDSVLNKANLVIA
Ga0209085_10017125	F015208	GAGG	MYKITVTYDENKSPDFSFQYADELQAHKEFAKFIDWGFADKYSTVNLYTPSGKCYTKIFYREGRRVVEK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209085_1001712

Overview

Ecosystem & Geography

Associated Families

Sequences