Scaffold Ga0209085_1001063

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1001063
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17820
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (82.35%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011142	Metagenome / Metatranscriptome	294	Y
F013741	Metagenome / Metatranscriptome	268	Y
F019966	Metagenome	226	Y
F043286	Metagenome	156	Y
F047566	Metagenome	149	Y
F068428	Metagenome	124	Y
F077013	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_10010631	F077013	GGAG	MAESVVYDVKGLLRELDHLQPGMRKALVKDAKDVAKPIVTVIKQSIPVTAPLSGMSKTANPTGRLAWGAGKPAKSVTTKFRSGRSTSRSITPLVSVWVNSPMTAIADVAGKGSMRKAKRITSEYAYKGGIRQHRVTTQGRTMIRVLKERNLNNFVYPNVEDRIDDAQAEVKLILERYARKVNRKLN
Ga0209085_100106319	F043286	GGAGG	VQDNQVECVRCGYRWVVNAEKRGRRDLKCISCRIKPATSIQYGKLRCIPHQGLLSNSLDPIDSNGSAVLPGVRVCGHRDCVNPTHIVSP
Ga0209085_100106320	F011142	N/A	MAVIKVSGKVSKVFGASNQGLNLVESYKSATGEDYTRSYTVWFAVAHNQTEGSEVTVYGQLSTKIEDYEDRNGQPARKVKLDINNAQIDVPPAPVLSAPF
Ga0209085_100106332	F068428	GAG	MLEDLAIPTRHTTCRVRTVGADMSDKDKAIFEQAVMNPEWPCKTLSNELLKREVKISDTAIKHHREKRCSCWKI
Ga0209085_10010634	F013741	AGGAG	MTEPKQPSNQSLLLQIVRDIEILKIQSIQILEASKDHENRIRDLERQLNRNAWVPSLITAVVTSFIVYLISKGFVA
Ga0209085_10010637	F019966	AGAAGG	MSEFQVSNEYKLQTLNSRLEQLNIEGWSNEEARTVAEAIGNSDEVDRLTANIAIIKSAIVAVQAQIDNLA
Ga0209085_10010639	F047566	AGG	MRIILDRFKAVVGVLSELVWRGIGIFLFILGGSAGVGAALTGSWINGVLVAWGTLMLSVVAAIGYAIATTGKVSRADVAKGANDAIQKAEQAEAAKKA