Scaffold Ga0209085

Basic Information
Taxon OID	3300027741 Open in IMG/M
Scaffold ID	Ga0209085_1000892 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027741 Open in IMG/M

Scaffold ID

Ga0209085_1000892 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20024
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (72.22%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

20024

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (72.22%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (44.44%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	2
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001459	Metagenome / Metatranscriptome	690	Y
F003304	Metagenome	494	N
F003962	Metagenome / Metatranscriptome	459	Y
F014827	Metagenome / Metatranscriptome	259	Y
F022371	Metagenome / Metatranscriptome	214	Y
F037193	Metagenome / Metatranscriptome	168	Y
F041081	Metagenome	160	N
F058800	Metagenome	134	Y
F098901	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100089213	F098901	N/A	MKKKEQVGKRKYKVEFTQTETFIVDVYAKNEKEAKALATRTFDAGDYQEHGDCGVELNCVYDVTNTDDPFYPQQR
Ga0209085_100089219	F003962	N/A	VVLNHDREQLKVAHKFIALLQRENAQLHGVLRLLGQLVDDMNANCSYEVFEVQWNSLTEQVKRLSGFFESHQKALQSLHDACPEVWDTDEVDDES
Ga0209085_100089226	F037193	GGTGG	MKSKDELAMQVKKEWDEQNLRWKLWLEAGGFTTEIFCYSSAEEEYSKCVRELVDHAYQMQSV
Ga0209085_10008923	F001459	N/A	MIRLLRSLKFFVKNYEWVNEPKWEDEDEKAWTGFLATPTGRKLSLILLNLTLRQNASAVMKKPEELADACGHARGYRACVATLESLASQKLNSAIPGYGDGSDEPVAD
Ga0209085_100089232	F022371	AGGA	MFCLLDLGTIVWVIASFILYSSMTLSAIYCALFIIFKLIDFIRKELDL
Ga0209085_100089234	F003304	GGAGG	MKQALVTQSFGEDWQKIIDLTRPRMEEYCKRHNTDFILIDKPLTHPAQYSKSAIGNIMATKGYDQVTFVDADVLITADCPKLSDDAGVFCAFDEGAYLDRKPDMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIVHYAGQSNDLTKLANQIKADDAKLVELGR
Ga0209085_100089235	F058800	N/A	MKQALSKLFYFLGDTTSRTLLRAGIGYSLYRTFMLWSLELDEKFDVWKEVKSKRRRKK
Ga0209085_100089236	F041081	GAGG	MIMEDVSVDFEFNGEKYTAYGNAEIDTITEDIGPVGYREHCYAKVVNNVIMSKIEISTATQDIKNPSKELLEKADDLLSIQATEDFDAGK
Ga0209085_10008927	F014827	N/A	VLRAILEIIAAVFRIIPGWKEKRTQNFENDWRKNRNAIDSDLRSESWWLRNNDTSNKHDRGS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209085_1000892

Overview

Ecosystem & Geography

Associated Families

Sequences