NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1000877

Scaffold Ga0209085_1000877


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1000877 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20224
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (69.77%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012658Metagenome / Metatranscriptome278Y
F054798Metagenome / Metatranscriptome139N
F064189Metagenome129Y
F074805Metagenome / Metatranscriptome119Y
F104766Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_10008772F064189AGGAGMAKSFRDLNTVEACNMNREQAMMYLINFFNSRMAAANKHNVSKAKELIGLHEVSVTELVNKYVELVLENS
Ga0209085_100087727F012658N/AMFATAYKPVTNNLDKLFSAMRAGKYHCVLDPKGNAHVGLVNGIMREDGSGKNWIVTINSRLRNEQVFIHAS
Ga0209085_10008773F104766GAGGMEWISFFERQPEDGQGIWYYGEYIGVWCGEYRYAPHDMVSPHLMICHESPGLVDRMDAPWWMLDDGKMDRPEKPSKDYPDDYPRLITVNGKEVWTTEGRMGFYEE
Ga0209085_10008774F054798GGAGGMIYLNINEIERLAEIVAELVKLGMSVTAELRGTKWHIEVTK
Ga0209085_10008779F074805N/AMEVVIGFQFERVSMNDVILFGSILSAVAAAVVGFVFYSVYGGSKASLANAQEGQVFNFVYEQPLHGTHERFLAKVIGKQTLTADQIKRLNRKSRYRINDPEFVRTTNLVTCRTADGKVRNFYAERVTKCRKPLLAGALFKSGFANLF

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