Scaffold Ga0209085_1000850

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1000850
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20676
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048983	Metagenome	147	N
F074331	Metagenome	119	N
F085122	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_10008503	F074331	GGA	MNDSCVNHAWEFNCVLDNNDDLKSWFYADTKQDATNRIKEYMGAKLISIKEIDDPLEIRKKQVESDKIRDALAKKRQEEFEIRQNLKNKQNNE
Ga0209085_10008504	F085122	N/A	MNDKDIDQIEYTDVKVSPESMEVHVDILKQNGYSIQKRDYVLTTCLICFLAGMYLMGLIR
Ga0209085_10008506	F048983	AGG	MIDLILKLKEKNIFKEGTMIETIIDKNHMGTPIQVRAAMRIKELHDNYCIADEEFDYTAEVPFRKIMYYDIITIDGMRPQDLAAVYNLAPKTSRFKKEKHHK