Scaffold Ga0209085

Basic Information
Taxon OID	3300027741 Open in IMG/M
Scaffold ID	Ga0209085_1000455 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027741 Open in IMG/M

Scaffold ID

Ga0209085_1000455 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30042
Total Scaffold Genes	57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (47.37%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

30042

Total Scaffold Genes

57 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (47.37%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006893	Metagenome	362	Y
F010247	Metagenome / Metatranscriptome	306	Y
F018712	Metagenome / Metatranscriptome	233	Y
F022646	Metagenome	213	N
F031868	Metagenome	181	N
F032656	Metagenome / Metatranscriptome	179	Y
F085365	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100045511	F031868	AGGAG	MVTVKQEIERLFLESKKHPHIVETYFEYYYTLLDHSDLTLDEFYKLYPQYDVEKTDSLYWKQFMQKWKETWNESKI
Ga0209085_100045520	F022646	GAG	VQIRKANIIHSVKHQKFVASFPCVVCGNNTQVQCCHIRSIPKIGNVGKGIRDDKYCIPMCFTCHSLQHQIGELEFFYRFNINPIAISMKLASISPCIKLNQLKQEGAYNGSLNYKEHIRNNKKSSLQS
Ga0209085_100045521	F006893	AGCAGG	MEVLTIKNISEITKKVLCNPNLYKEVNFFEVPHNKVCLAVIRELTEFSYNDIGKAYGKSWFTIYSAVKDTQKNGLKSFTNRVIELVKAKAK
Ga0209085_10004553	F032656	N/A	MNFYLITYAISFVKVNDENIREDIAHVRFFDNSNFTNSSSFLASLKQVKKLRITGVEFDVEECDWFDYYEDISNTVH
Ga0209085_100045532	F018712	AGAAG	MCGRKKPKMIDRKMRGSHDLEVRLFDALKQNDFNQEEIQRLNLIIKKLEEDLENANKSVN
Ga0209085_100045553	F085365	N/A	MVYNNEEYNFYTKENDMLNYSDIKSYWSKFANDYVQDVKSFWNNYLDTVNKFYNK
Ga0209085_10004558	F010247	AGGAG	MNVQGVVKYVYDNRLTKDGTPNKFPNFKFKVNDQEIVLWSAIKPVFLEKGKRVSVTCQASKKNGSLFVQSKEDKSPMMQELPADNKPDTSFNPEELEKELANVAKDFDADLRIETKKPINKDEYMFVMALAKSAIESGKINVNKEEIDLLIKDLKFLFQMNFHN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209085_1000455

Overview

Ecosystem & Geography

Associated Families

Sequences