Scaffold Ga0209085

Basic Information
Taxon OID	3300027741 Open in IMG/M
Scaffold ID	Ga0209085_1000452 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027741 Open in IMG/M

Scaffold ID

Ga0209085_1000452 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30134
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (86.79%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

30134

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

46 (86.79%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034165	Metagenome / Metatranscriptome	175	Y
F049573	Metagenome	146	Y
F056554	Metagenome / Metatranscriptome	137	Y
F070923	Metagenome	122	Y
F072014	Metagenome	121	Y
F078637	Metagenome	116	Y
F082075	Metagenome	113	Y
F098561	Metagenome	103	Y
F102439	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100045229	F049573	N/A	MVMALPTGKTLISTADAAKILGVSMGRVRQLGILGAKKGGLTRYWAAPTALVFDEAEVKKVAADRPKTGKTGRPKGGFKAN
Ga0209085_10004523	F078637	N/A	MSKDWITVEFLGGPLDGALRPVQVGVAVFYLANGAVIHAYVADEIHEGHYVRQVMRHFEIIHSSRFA
Ga0209085_100045232	F082075	GAG	MPHVSLRFRLPDEQVEFTAALQGADAKSAIWQVDQYCRSILKHGEPSEETRRHLEEIREMLRERPGLLDD
Ga0209085_100045233	F102439	N/A	MGEVQRSFVTDDDLPPAKGKRRRMPERLSPPMRKFLTKLARIGARVTWCIELLYDPSKGGQGELRDRAQAGDHTLVLDTVREVEYRAAALAEDIEVFMRPPDRLPSEPGKPARVEAMAQRQAAKLHIFD
Ga0209085_100045234	F070923	GGAGG	VGDAPAGMLAHLRGRLRAEIGPRAVQAGRAFDEFCDAICRCWNSEHWTKLARTQPQSQMLAVMDAKVLIAKVQEDVEAMWGASPELRTLYADVGREAVEVFARLWFASMANRTWMRQACKEARRT
Ga0209085_100045249	F098561	AGGAG	MAIALGKDCTVSFAGGTIYSARNVTLTESARTIDINPYGSRYAAVYSTGYECSVSVEFNDGDDLGSAFSLMHTGGTFQVAGGQGGFSFIAVMTSITETDPIDGVATFVVEGRMTDPRLTR
Ga0209085_100045250	F056554	GGA	MAITLGKDASSAPPFGEGIISATFTEECETIDISNRANIGGSAGTPGRKVSKAGFVTKTWEIECHDPDGLITSLNAAGTSGSFSIMSVTENVSIDGAVTYNVTAKEF
Ga0209085_100045251	F034165	AGG	MAIGTVEITLGKDVTVTGVANARSATVTNSASDVDVTKFGDTSRKFRKALIEQTIELECVDAPGVSIGGTFTISGTQTGNATYICTNIGQSQPLDGIITYTVSGSRTVSA
Ga0209085_10004529	F072014	AGGCGG	MSDGDWVFKGSPRDVVAALMQRAWDDEVSDDDRILLETAAEALADSLDRNVRLAQVIEKSGAGL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209085_1000452

Overview

Ecosystem & Geography

Associated Families

Sequences