Scaffold Ga0209085_1000396

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1000396
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32251
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001091	Metagenome / Metatranscriptome	781	Y
F014362	Metagenome	263	Y
F100418	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100039611	F001091	N/A	MLQTKKENMNIREVAKKLAVEFKMPRADRYDLYLREFDKQVEVLGWVQDPTADMNDYRGREMLFPKRWVTIGVLPERTMVNV
Ga0209085_100039618	F014362	GAG	MGTLWEKLLFWKKQKMLKEGVDYNFINFKDSDLTGIELLVEEYKGVIYHYHKAKIVEEGEFARLQFGYTIVHPGEQDIDDLTNDPKLHTIMGDILSVIITAQNEQIRNDNTKELDL
Ga0209085_10003966	F100418	N/A	MLKRDKNFRISKQTKRIMATFVDPVARHAYKNAMIEAQLVGSQVFERKKKLHEKEPA