NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1000350

Scaffold Ga0209085_1000350


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1000350 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34816
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (67.24%)
Novel Protein Genes19 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Associated Families19

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F001459Metagenome / Metatranscriptome690Y
F002149Metagenome / Metatranscriptome589Y
F002826Metagenome / Metatranscriptome527Y
F003304Metagenome494N
F003962Metagenome / Metatranscriptome459Y
F004760Metagenome / Metatranscriptome424N
F007467Metagenome / Metatranscriptome350Y
F010449Metagenome / Metatranscriptome303N
F010603Metagenome / Metatranscriptome301Y
F012569Metagenome / Metatranscriptome279N
F019450Metagenome / Metatranscriptome229Y
F020665Metagenome / Metatranscriptome222Y
F021063Metagenome / Metatranscriptome220N
F022371Metagenome / Metatranscriptome214Y
F033721Metagenome / Metatranscriptome176Y
F058800Metagenome134Y
F074558Metagenome / Metatranscriptome119Y
F098901Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_100035011F002149GAGGMMAVEYIEQSGVPESMWPNLAEWFGWFEKQGMVGIVEDKDGIAGVALARCIKDGQKPDHYVHSEDGENVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRSGKPRSYDYMTFMRKARV
Ga0209085_100035014F074558AGGAMDRVSYGPLTLFESDAYKQAKAMKAEEDALKLQKLRMDIAKSQEEADMSTAIGRASKAGDIAAFLEQEKQKDVGIPIGEEMGAKMTAKGGPSILEATRMQGELDVEARARQARRDAAMNFAAGEKSLLPTANVDLGGVKQTVLAGQAGKTSADIYGQIYRNQVPQVAATYEAEGFDKDTAIRMASQDVRKELVKASTGGKVVLTGADGLSTISYNNEQAEKMWRDPKTPKAIKMQLNNFFGKEEEPQAASWIKSRLGR
Ga0209085_100035019F007467N/AVNDKEAWDQFEDGLQDAKSYDEAIAWIKANQEIVEKLTIRAMINKFNRDISHANKTWRN
Ga0209085_10003502F004760AGGAMPVYEYEDTRNGKVVELEKTVAERDSVPRYLKRFTVPRKLTLVGVGEPLDNPLGVNQTNLLKGYYRQEQKLGSRFKSEHTPDSIKRAALRRKKYGD
Ga0209085_100035025F033721AGAAGMRWIKKEFDDDGKPEWAVYIDEAGEGNEEDWSHFDTYRTRDEAVEACWKFTWEDYDCSDK
Ga0209085_100035026F058800N/AMKQALSKLFYFLGDTISRTLLRAGIGYGLYRTFMLWSLELDDKFDVWKEVKPKRRKKK
Ga0209085_100035027F003304GGAGGMKQAMVTQSFGEDWQKILDLTRPRMEAYCKRHNCDFILIDKPLTHPMQYSKSAIGNIMATKGYDQVTFVDADVLITADCPKLSDDAGVFCAFDEGAYLDRKPEMVKLAGAFGGIIEPRFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIKEDEAKLVGLGR
Ga0209085_100035028F021063GGTGGVRSTHLCRGDYDERLQQLAGEVALQAIRDLRLLRKRGMVKGMRIVKDHHGVPLNDALEYKNSHEVQKLLRDFKNGTVSWWCRASGVRIDNRTLLRKLKENDYALPT
Ga0209085_100035029F022371AGGAGMLCLLELKDIVWVIGWFILYSWIFLSIIYCAGYIILKLIDFIKEELEL
Ga0209085_10003503F010603AGGAGMATEFVRSTRKAKNKALRFDAQGFTNVFEVTASSSGGTVNTVATAPASLNVTLNGTSYRIALHT
Ga0209085_100035030F020665AGGAGGMKKKTKDIKLVRVDEFKAAKIVVEVEDELFEAMAQAGRKHIAKDKVACFSYALNKALLELCEEVK
Ga0209085_100035034F002826AGGMLVESKARLKWGRDILLTARDKLAVERDRASHGHAIDIIRIIAMVDAVALITKEILEEDEKGLTQ
Ga0209085_100035039F003962AGGVGLNQDREQLKASHKFIGLLQRENAQLHGVLRLLGQLVDDMNANCSYEVFEAQWNGLTEQVNRLSGFFESHQKALQSLQDSIPDDFDNDEVDDQ
Ga0209085_10003504F012569N/AMSRALDKFQAQYGFSVGTQGTATGGYWAIQMLSDTTFSAISGKYDGTLTGVTIGSGNIIYGEFDSYTAGTGRVIGYIAG
Ga0209085_100035042F098901N/AMKKKMVKRKYKVEYKQTETFVVDVYANNQEQAKKLAGIRFDAGDYQETGDCEVELNSVYDVTNTDDPFYP
Ga0209085_100035047F019450AGGAGMTSYAVYNSVGQFFARFTSYARALRWAQREGMEWSAIIRKEKEGTK
Ga0209085_100035057F001459N/AMRKLKAALAFIRDQEWVNEPKWEDEDEKAWTGFLSTPTGKRLSLILLNLTLRQNGSAVMKKSEALADACGYAKGFRGCVATLESLASQKLNSAIPGYGDGSDETIAD
Ga0209085_10003506F010449AGGMSEEQVWNMEVRLARMEERQVQLYAMVERSLAFHGDVANRLGALEHLRTKVLAVAGVVGLACSMAWDVLKNRFN
Ga0209085_10003509F000635GGAMTLTEIAQYAGEKVGKTDSDTLTFLQKAASLAYRRVWDFAPWRETVTSSTYSVGTNRTITLGTNVETPLSVAYNDAEVDPVDLATIISQDPGLLSDERTGDPDTYHFTGRNSSGVAELDLYPRLATSGTIPLRVIEKLKCITRSNYIVDFPPSNDALGDELRLPHVHHLVLALTHADALERERQYTKAQVITQGANSDLAAMANYELSQVGGVKQITPQSLGELTIEEMFSA
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