Scaffold Ga0209085_1000297

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1000297
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37217
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (64.81%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Associated Families: 15

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F001459	Metagenome / Metatranscriptome	690	Y
F002009	Metagenome / Metatranscriptome	604	Y
F002149	Metagenome / Metatranscriptome	589	Y
F002826	Metagenome / Metatranscriptome	527	Y
F003304	Metagenome	494	N
F003962	Metagenome / Metatranscriptome	459	Y
F004010	Metagenome / Metatranscriptome	457	Y
F007467	Metagenome / Metatranscriptome	350	Y
F010449	Metagenome / Metatranscriptome	303	N
F011649	Metagenome	288	Y
F021063	Metagenome / Metatranscriptome	220	N
F033721	Metagenome / Metatranscriptome	176	Y
F035221	Metagenome / Metatranscriptome	172	N
F090072	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100029710	F000635	GGA	MTLTEIAQYAGEKIGKTDADTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTNRQITLGTNVETPLSIAYNDAEVDPIDLATIISQDPGLLSDDRTGDPDTYHFTGRNSSGIAQLNLYPRLATSGTIPLRVVEKLKCLTRTNYIVDFPPSTDALDDELRLPHVHHLVLALTHADALERERQYAKAQAITQGANSDLAAMANYELSQVGGVKQITPQSLGELTIEEMFSA
Ga0209085_100029712	F002149	AGAAG	MTAIEYIEQSSVPEAMWPNLGAWYGWFEKQGMVGIVKDGDEIAGVALARCIKDGQKADHYVHSEDGENVFVDLTISSKGAKSLKCLLLLLWERFGPRKRITFNRSGKPRSYDYMTFMRKALL
Ga0209085_100029718	F035221	N/A	MVTAMLMASVNADDFDGGVYDSGYAVFSGGKGLAITSNGLIVDNGILKQTPNGCYSSCGDVYYGGNEIVTKTGYLYYGSNGTKVQVGEYYSGTAGSTYVFENDPE
Ga0209085_100029720	F007467	N/A	MTEKEAWAKFEDGLKDTQSFDEAVAWVKKNKKIVEKLTMISMIRRFNEDISKANRTWRN
Ga0209085_100029724	F002009	N/A	MVLGKGLHASRDEVMTAPTIQEMGNAAQEIVWRVMGKGSDKSGYGDWLEKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDVNGETSVDHLERALVRSLFVLAQIRKEVPRL
Ga0209085_100029725	F033721	AGGA	MRWIKKEFDEDGKPEWAVYIDETGEGREEDWSHFDTYQTREDAIEGCKHITWEDYDRNDK
Ga0209085_100029726	F003304	AGGA	MKKGLVTQAFGDDWKKILELTQPRMEAYCKRHKIDFMALDKPLVEPVQYSKSAIGNIIATKGYEQITFVDCDVLIANDCDEIGAEVEMFSAFDEGAFLDRKYEMGKLASAFGARIDPRFYVNTGVFVVSSKAVGILSMPPLGLLPNHFAEQTWMNIMIHLWNVPLDNLDPAYNCMTSVESHFGLDRYKDAFCIHYAGQSNDLVKLADQIKEDEAKLVELGR
Ga0209085_100029728	F021063	N/A	MRSTHLTKGDYDERLQQLAGEVALQAIRDLRMLRKRGMVEGMKIVRDHHGVPLNDALEYKNMHEVQNLLKDFKNGTVAWWCRASGIRIDNRTLLRKLEDNDYAIA
Ga0209085_100029732	F004010	AGGAG	MLGKDVSKNMHELAMDNKKKGKERGAGGKPRSRQQMIAIALSAAGKSNKSHRKFRMRSGS
Ga0209085_100029733	F002826	AGG	MDTEAKARLKWGRDILLSAREKLVVERDRASHGRAIDMIQIITMVDAAALICKEIVEEQ
Ga0209085_100029738	F003962	N/A	MATDESQEGWVLNQDREQLKLANRFICLLQKENAQLHGVLRLLGQLVDDMDANCSFEVFEHQWEGLTDEVNRLSGFFEAHQKALQSLHDACPEAFDADEVDDS
Ga0209085_100029740	F090072	AGGAG	MDEQQIIKAYLSRLGRKGGSVKGPQKVRPREHYQKAVGIRWAKYRERQTESQASKR
Ga0209085_100029744	F011649	N/A	MDESAADSTAPIEKAKNGREVFTEKIAEEIISACGSGFTLEKAGALVGVNPSTIRTWSQRKPDFARRVETARKKHELSLLRDIELAGAKSWQAKAWMAERIYNHAQPSARLSVTQEHTHGISSNLASLLAGIAGRKKTQVIDTKAVSVNPIPAIKYNTYCATDGTQTIVTPTQKVSGRTKHIAMRRRKPRKESLAKYTTTPPTTPPAPI
Ga0209085_100029751	F001459	N/A	MRKLKAALAFMRDQEWVNEPKWEDEDEKAWTGFLSTPTGKRLSLILLNLTLRQNGSAVMKKSEALADACGYAKGFRGCVATLESLATQKLNSAVLGYEDGSDDTIAN
Ga0209085_10002976	F010449	AGG	MSEEQVWNMEVRLARMEERQVQLYAMVERSLAFHGDVANRLGALEHLRTRLLAVAGLIGLACSMAWDVLKNRLSN