Scaffold Ga0209085_1000284

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1000284
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38123
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (34.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030662	Metagenome	184	Y
F039455	Metagenome	163	Y
F048735	Metagenome	147	N
F055388	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100028411	F055388	N/A	MAQNGITFSSCQDVDTLFREARTYYNPFFIKKMAINSIYYGRLETETWPLNTLPTQKAFRFGRGWYNPDQPWQEVQSGRCVQNADDIQFETIAHPGTESYSFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMATNVNITKNVHEEFSRSQWIGGAGHKWCPISDGQSLVSCVAQDDQMFIVQPFEGTNEGSFNMGYVYVKLPASQLGNIGLLSLDTLDDILINLQREDDAYRLDVSEAAGRPLLEVIVPDSRVLRQLWQYAKQSGGWWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRLKVDWAYNAALSAFNANNPDTWPRLVRVLPYVPVTTELGCKYVQNPEYNNADFGITNPWVNKAMIKWISPSQSGIGEAQGMTQNYAGDWQWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNTSRLIIPAPCTLSTNYTPQYTPDCYVCSSVVSQPI
Ga0209085_100028416	F030662	N/A	MRLKDKNGSIPGGLWYQYNDDQGNTYRVNGMDLPFGRSFLQKVSSDMMVNNVSVPDNLDYLIEQQICNRIGSQYCWQEAGDKVANVIHTFANLGDRVAASLGVKSNLEQAAKGCTSCQKRRQAMNQALG
Ga0209085_100028417	F048735	N/A	MNYKNLCLDVPQDTDYGIPFFKNQHQFVRELIAYRLTRGEFGRRERIKMGIKLDECGLLNPAQHMVNCFQLIYGNDVLLHSQGIANNYALDIIDLFCNENDWGIAGCASSGKTFSVAACIIIDWLCAPDFTSTYVASTSLDASEDRLWGKVCTLYRIAMRNLQAKYGKDASIGNLVEYRRMIVFESIDTKDSERDYTNAIKALAFPKGGEGKRSVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPSSTANNPHTELCQPDHPLEWESVNRYTHKWTTRTGVALHLSGEDSPNFQVPDAEIPPFDRFLTIQGEAATLKRCYGNKNALEYWRNVYGWWPDSSVELTIFSKQFIQGCDINWEPVWSGKTKVVCGFDPAFTAGGDRCAATFCRFGPNDTGRNLGYYLGTREYNSSVGEVFEESIAIQVVRDCLEYGVHPRDFGLDISGDGGKMMRAIIIEWSKYNPEAMFVFPISSMGMPTERKISNLDQRTCKEAYDRLVTEYWFAVHTAMSTRSLVGIDVERHSQVVNELCSRLYSHKGRKVSVEKKLDMKQRLKKSPDLADSFTYAVQMLRRAGLEFNFEEEAESLDILEIRDFENRLIHSKGDTEEAAMEEDWGYGGSTPDPDGF
Ga0209085_100028464	F039455	AGG	MAKTFLNLGRYGDVIALLPVLKKENDDSGEKPRLIISKDYCDILDGVSYVDPVIYDGTFDDISGALKFAKGIDEGVITSQVVGIPDVVVSQVYGRNHTPKIICDSFQQDLWRLADRLDLWPKQPPLVFDKRNKKREAKLIKHIPTYKPWVVISAGGFSSPFPYRELLMEIVTHCLSDFHIVDLAKVKAEKFFDLLGIMDHPNTAAMILTDSGPLHLSYATKKPVHAIVTDSPSLWHGAAWRPFYASYTRYQNFPRDVTRILDLIRNPPIKPKLSNIIHVYQRTPWATGEEKRRNEVAEKSWEGIGCVDLGLDDNCFVRSAAEMVHDETKRIPMIKDILRLACVGRDDSDVLLLTNTDTCIASNVLEKIVGVLPAYAYRNDFRSLDAPIADDQIVKGHKYAGCDFFAMRVGWWRKNHQLFPDMILGRHSWDRIMRELYKLAGGREIENLIYHERHPSAWEDPQNINRDPSNLRNCKLAREWLQERKMPLLEIESLNYEGKYKKKS