Scaffold Ga0209085_1000214

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1000214
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45053
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (82.81%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008072	Metagenome / Metatranscriptome	339	Y
F009735	Metagenome / Metatranscriptome	313	Y
F016782	Metagenome / Metatranscriptome	244	Y
F017814	Metagenome / Metatranscriptome	238	Y
F020318	Metagenome / Metatranscriptome	224	Y
F029042	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100021412	F020318	AGGAG	MEAVTPDTFEEWKFHPVTKRLFRMLSDDRESMKEGLINNAYDEELEVKGRCRAIAIILNLEYGDMFEPIQKRETNE
Ga0209085_100021415	F008072	GGA	MRRKTSTDKRYKKSHWTQNQKLQAVSTYLMLGSLAETAIVTGIPLPTIKMWKLTDWFKEYSLQLQAEDVQKMDSNLKRVVDKALKAVEDRLDLGDAQFDQKTGLITRIPVKAHVALKISTELLTKQQKLKDNPLKEEVEKTIDDRLLKLSEEFARFAAIKSSIVDVESRVISNV
Ga0209085_100021417	F017814	AGGA	MSTQNNFDFNGFNAMTERKPAGLQIFLAQQLLSNALWSMENYDNPRQVEVRDALNALKTLRAQMKSDAAARESAIG
Ga0209085_100021423	F016782	GGAG	MDTFHSTLYAAATEALVSDASATSTFEKMIQVAYTHSTEETFAKDIKATEKLIKKEFEVGSMPGPWRSAKSVIQSAMKLGIGLVDDNGGYCGKTYLQNKIKEMKTGVKEPMTNEEYSNKIIKMLMNPPDELDSALIFKTVKDFVIGN
Ga0209085_100021429	F009735	GAG	MTMMTGIVEQVSTKDVTTKFGLKPTYSIKVNGGWVKCGFKAHSANVGDEVEFDGNTGTYGLETKAVNVIRKGSGVVPPAAPTVTNSTAVPVKPSYGGYKEKVFPIPALHGDRAIVRQNALARATDLYVAARGGKPFELEAESLDFVIKLARKFEAYTAGDLDLAEAMNEDAEESKQGELF
Ga0209085_100021445	F029042	GGA	MIDPITISAAFALAKSTIAGVQEAIQMGKDLQECSGDLIKFFEMRDTVAKAATEDKGKQPRSDMGQALDTVMQAKALRDAEKKLKEQLIYSGQGDVWEAIQAEYNLIIANRKREERKAEAAAKNRREKMAEMVETIFYGLAGCIVGGLICWGTIEFVSYKMRI