Scaffold Ga0209085_1000179

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1000179
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49480
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (30.26%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030662	Metagenome	184	Y
F038058	Metagenome	166	Y
F039455	Metagenome	163	Y
F048735	Metagenome	147	N
F055388	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_10001791	F055388	N/A	QDVDTLFREARTYYNPFFIKKMAINSIYYGRLETETWPLNTLPTMKAFRFGRGWYNPDQPWQEVQSGRCVQNADDFQFETIAHPGTESYTFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMATNVNITKNVHEEFARSNWIGGAGHKWVPISNGQSLVSCNAEDDQAFIVQPFEGTNEGSYNMGYVYVKLPASQLGNIGLLSLDTLDDVLINLQREDDAYRLDVSEAAGRPLLEIIVPDARVLRQLWQYAKQSGGWWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRLNVDWTYNAALPTFNVNDPTTWPRLVRVLPYYPVTTELGCKYIQNPAYANADFGITNPWVNKAMIKWISPSQSGIGEAQGMTQNYAGDWEWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNTSRLIIPAPCTLTPNYTPQYTPDCFVCSSVVNQPI
Ga0209085_100017918	F038058	N/A	MAGEQYTYDNTERGIVSDMATPQPMQRVNLRNDIPAIRAYKDARTARIKAIGEQTQSAFSVGGPANETAMGRGTPFTADWL
Ga0209085_100017927	F039455	AGG	MAKVHLNLGRYGDVCAFLPVLKNEYDETGEKPKLIISRDYADILEGVSYVEPIVYYGKFEDITGALQFAKGLGTDVVTSQVVGIPDVVVCQVYGEAHAPMIICDSFQQDAWRLCSKLELWPKQPKLVFDKRCKKRERSLTSKIPKDKPWIVVSSGGNSSPFPYNDLLWEVLNHSVPEFHVVDLSNIKAEKFFDLLGVMDHPNTAHMILTDSGPLHLSYATEKPVHAIVTDSPSLWHGTAWRPFYASYTRYQNFPRDLTRILDLIRNPPTKAKHQNIIHVYQRTPWATGDEKRRNAVAARSWEGIGWVDCGLDDNCFVRTSSEMVPDETKRIPMIKEMLRLACVGRADTDVLVLTNSDTCVASDVLKRIQGTLPAYAYRNDFVRLDAPIADDKIAKGHKYSGCDFFVMRVGWWRKHHQLFPDMILGRHSWDRIMRELFKLAGGRDIENIIYHEKHYAGWENPQNLHRDPSNLRNCLLAREWLQERKMPLLEIEQLNYEGKFKRIKAKPLR
Ga0209085_100017971	F048735	N/A	MTYNGLSLVQPQDTTYGLSFLESSPQFVRELVAYRLTRGEFGRRERIKMGIKMNECGLLSPAQHMINAFQLIYGNDVLLQSQGIPNNYALDIIDLFCNENDWGIAGCASSGKTFSVAACIVVDWLCAPDYTSTYVASTSLDASEDRLWGKVCTLYRIAMRNIQAQHGKDASIGHLVEYRRMIVFESIDTRDTERDYTNAIKALAFPRGGEGKRSVENTRGRKNARMRLFLDELAEMDLFALDTRVNLGANPDFIFGGMANPSNTANNPHTELCQPDDPMEWDAVTRYTKKWKTRTGVALHLSGEDSPNFKVPDAEIPPFDRFLTVEGEAATLKRCYGNKNALEYWRNVYGWWPDSSVELTIFSKQFIQGCDIGWQPVWSGKTKVVCGFDPAFTAGGDRCAASFCRLGPNDTGRSLGYYLGTREYSSSVGEVFEESIAMQIVKDCLEYGIHPRDFGLDISGDGGKMMRAIIIEWSKFHPEAMFVFPISSMGMPTDRKISNLDRRTCKEAYDRLVTEYWFAVHTAMSTKSLVGIDLESHAQMINELCSRLYQHKGRKVSVEKKVDMKARIKKSPDLADSLTYAVEMLRRAGLEFTFAEESESLDIQEIRDWERHLIFEKGKSDDPASDEDMSYAGTAFDEDGF
Ga0209085_100017972	F030662	AGGAG	MRLKDRNGPIPGGLWYQYSDDQGNTYRVNGMDHPYGRSFTQKVSSDMTINNVAVPDNLDYLIEQQICNRIGGQYCWQEAGDKVANVIHSFANLGDRVAASIGVKTNLEQTAKGCTACQKRRQAMNQALG