NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1000154

Scaffold Ga0209085_1000154


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1000154 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53822
Total Scaffold Genes77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)65 (84.42%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000952Metagenome / Metatranscriptome822Y
F006696Metagenome366Y
F029032Metagenome189Y
F030983Metagenome183Y
F075681Metagenome118N
F077009Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_100015428F030983AGGAGMAQREIETIISTENGVRVCVSEWDEGGVWLYLAGRGASMSAVLTRTEAQTMLAGLQEILAKEVAA
Ga0209085_100015434F006696AGGAGMRFFDFLKQQLKEPSPLEVISKELAQAHLDRLEAEGAVEYSTAVLELNMARIERLNNRIKEYK
Ga0209085_100015451F000952AGGAGMASDTEQRSINVPQHKRLAMGEKLDGSSMQPKGQSQSKPQGGLSHVKAKNK
Ga0209085_100015452F077009N/AVISELIHLIKQRQAEIRLSLVENPVGNYEAYTRLVGEYQGIQWVLDSLNAKLAEND
Ga0209085_10001546F029032N/AMIYPREVYDPRNLTWDYWCALMSELFAANQLGTVPEEQWQDWANAIAGIGRFAGAPDGRNFATWQDWAQALNNALRK
Ga0209085_100015477F075681GGAMSEEKIQNMEAKGQLIEKITFALLPLLFSCVVYLMSALS
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