NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1000102

Scaffold Ga0209085_1000102


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1000102 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)61217
Total Scaffold Genes85 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)79 (92.94%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001817Metagenome / Metatranscriptome630Y
F012101Metagenome283Y
F012327Metagenome / Metatranscriptome281Y
F024742Metagenome / Metatranscriptome204Y
F042218Metagenome158Y
F051929Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_10001022F012101AGGMAQKNVVAPRLPNPTPDYDFTMMNQLLSVLRLYFNQLDNAGPIAASSQFNGTDVVAGLSFPPTGNTTTPSLPTQANLANLRVGDIYYDTSASNVLKVKV
Ga0209085_100010226F024742GGAGMNNETQRIMEALMLIYGRDLQAATITVLLKDGDTAVRFLTYTLPQMETEK
Ga0209085_100010227F051929GGAGMTDQRYFADGREFLYPHAGDPSPPKDTKLLILTRGGVCIVGFWGNEWCLGWLPLPKRNKEKEDREKVQSNTDT
Ga0209085_100010247F042218AGGAGMRSPSVEALTTLFGENAKRAKQLLTMTRDELLATPVGVRRYAECYHPPTTQDIRMECLNALGDYHGVEAIETKRGICLYLNAGDTYVPTLVRWNGAYRIACWGDIVEKYGIEGAY
Ga0209085_100010253F012327GAGGMIDKYLEHLSKKIDDKVGQLQINLADGNAMDYSEYKKMCGEVKGLLTARLFITDLQERLKNDDDE
Ga0209085_100010260F001817AGGAGMMQTDVKSAHLSAAGSYYVGRTRLKGFIVSPKASTAATFEIRDGSSTAAVLYTMDIASLSTPNTFSMVIPSEGILASTGLYLTLSVGSVTGITIFYG
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