NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1000099

Scaffold Ga0209085_1000099


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1000099 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)61748
Total Scaffold Genes78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)64 (82.05%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000273Metagenome / Metatranscriptome1401Y
F005025Metagenome / Metatranscriptome414Y
F021992Metagenome / Metatranscriptome216Y
F023293Metagenome210Y
F038156Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_100009936F021992AGTAGGMQQTDVKSTHLNSSGSVFAGRARIKGIALCATASTAGTLVLRDGGSGGANVVELDIPSNSNPNSFYLLIPGEGVLCATNIYASITGLASVTVFYG
Ga0209085_100009946F005025AGGAGMDRKMVKAIADVEAKKEVRGHEARMHKGAKKMKAGGPTSEDRMKYGKNLSRAMNQGSK
Ga0209085_100009960F000273GAGGVTEKLEAKSQLIEKTAFAVLPILFTCVVYLMSALDKLTHDVTVLNAKISLVVTSDNKQAVNSGAELAREKLRQDLEKEIQANRDLIHVNKERIVILEQKVK
Ga0209085_100009975F023293GGAMNKYGILDDEGKVVRWVWHMPPYPHIVSKPKRKRKPKLDFSKCEPAPF
Ga0209085_100009976F038156AGGAGMKRELYDFTTPPDSKGAHASLYYFPHNKQSSIGLQSRAPAYNEPPCMVANYDKDGNLLYTRFIFKDGTWRDE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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