Scaffold Ga0209085

Basic Information
Taxon OID	3300027741 Open in IMG/M
Scaffold ID	Ga0209085_1000095 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027741 Open in IMG/M

Scaffold ID

Ga0209085_1000095 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	62827
Total Scaffold Genes	79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	74 (93.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

62827

Total Scaffold Genes

79 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

74 (93.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001827	Metagenome / Metatranscriptome	629	Y
F005476	Metagenome / Metatranscriptome	399	Y
F008750	Metagenome / Metatranscriptome	328	Y
F012101	Metagenome	283	Y
F084129	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100009510	F008750	AGGAG	MKKVRFMELMKEPFKKPTPLEMIAAELSDAHLEKLNAETAVEYAQSIVNYNTTRIARLNARLEEYK
Ga0209085_100009529	F005476	GGA	MTLFIRHVETEHIQQIWPVVQPFIEEAMQKGGDFPDWAQSYNVAHIQAFLTAGQWLLLVAVDEENKIHGAATVSFINYPLHRVAFVTTIGGKLISSEDTMEQLKLLLKQRGATKIQGYGRPAIVRLWKRYNFEPRNTLVEVLI
Ga0209085_100009532	F012101	GGA	MAQKNVTAPKLPAAIGNEYDPALINQITNILRLYFNQLDNAGPMVASTQRNGTDIVAGLSFFPTAGTTTPSLPTQADSANLRVGDIYYDTSAGNVLKVKV
Ga0209085_100009555	F001827	GAGG	MNNPHDAKTMADGAAVVMGLGGFLGWMTPVVTLIGGVLTIVWMCIRIWETDTVQKLVNSDAVQ
Ga0209085_100009570	F084129	GAG	MTIEQTTDYSVVVNNCTDAVRKDISTVNKWQIAGASVAAFFGTESALTEIKAQFIADAILPAIDKRHAKALSIELPRKNGKEYAALSAGEKETWDAVNQAKKDARATCDTYFARIVKYAFPKDKAESDTTPTSLKTKIQEQIADLVKKCEKAEGADFDLVATLAALQNVLTIVNK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209085_1000095

Overview

Ecosystem & Geography

Associated Families

Sequences