Scaffold Ga0209085_1000029

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1000029
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 97533
• Total Scaffold Genes: 140
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 105 (75.00%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F015208	Metagenome / Metatranscriptome	256	Y
F019426	Metagenome	229	Y
F028070	Metagenome / Metatranscriptome	192	Y
F028168	Metagenome	192	Y
F037030	Metagenome / Metatranscriptome	168	Y
F041564	Metagenome / Metatranscriptome	159	Y
F042147	Metagenome / Metatranscriptome	158	Y
F064358	Metagenome / Metatranscriptome	128	Y
F071905	Metagenome	121	Y
F080046	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100002911	F064358	GGA	MQCFSCGKQKNELHPKKSDIIDGVTLFMCQTCIDSKFEPRWVIILSGRQNGVESVKDYIIKRRYIGRIIDAEELIA
Ga0209085_1000029122	F037030	AGGAGG	MNNENKVRIRTALVMVYVSIITLLFGINSEAHAQMKEAIVYNKNILYINKFNNLVNIKDMINIDYNNILKRKVHTKTFYLVNDLSSRDTFQMPDYSHELNLKTTRVDKRVIISRLANALKSTETGGAGAYYRKSYSSSACGAYQYMPETWNNYMGYKNPCKAPEWVQDARIIHELEFNYKKYHDWTKVIASHLMPSRANNKKTWNKPVSGNPTVAQYVNSVLNKANLVAA
Ga0209085_1000029128	F000684	AGGA	MTLSGYTYQIGDLFTTSKTGVTGRIASFSPISNKVTRVNLILANGSRRFAMVKTTK
Ga0209085_100002913	F028070	N/A	MAKKIRDVKVPVKGLILDIRARPNYLALTVYESNVMEYSENQRMALMDYLLLIRKLIMSYGTPCEIEGMKYTDEQARKQRRTS
Ga0209085_1000029131	F080046	GGAG	MSLSLANKLAQDKFFLPPSKYINHKVVEILSLNDETETMSVTLQKYGISRSANAVKGNLITLELPYAEFKNLNGWGKNK
Ga0209085_1000029138	F015208	GAGG	MYKITVTYDENKSPDFSFQYADELQAHKEFAKFIDWGFADKYSTVNLYTPSGKCYTKIFYREGRRVVER
Ga0209085_100002917	F019426	N/A	MYKDGNPVLVHFRKEKMRVIVFGSKDWSDYNDLIRQLTVLIDDRKHFYPEDTEYTFVHTGMRGAENMVTEYIGKTEKFLRQKGYKIKEEIIRDKSGLADHSLIESMPDFALVFGDSPRNRSCVKLLEAYAVPHRYIK
Ga0209085_100002920	F041564	N/A	MEYDPSNEEHREVMERLVEEGAAILDGIDEDGEPIYKFDMNLLEEVMPELHQAMMDDMDKVLIDLYQKGLIEISYDEDLNAQMSVSPEGRQALENAGFDMDSSEEEEY
Ga0209085_100002936	F042147	AGG	MLANGTIRTIEDEKDIYISLTQLCEYFTQSVVNMQKEIEEADPKNKRYAAGLLDMMHTIADEMVQLGKFEAQRRLIDSPEDLLKMIDKNPFGIVE
Ga0209085_100002944	F071905	N/A	MKLYDSKDWCYKRYVIEKKSILDMAMEAKCSHMTIQRSLQRWGLIKQQRKWTK
Ga0209085_100002948	F028168	AGGA	MTDKSTIDIINEITEFNDMKEFMGDSDLDYALDLIIKLIAKPDVPSSKAPDLIIKMQALSAKFAMLSRFYTTFEKGGENAKKKNVYYTAEEAINKLVDALKYSARYGA