Scaffold Ga0209085_1000007

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1000007
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 146310
• Total Scaffold Genes: 210
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 157 (74.76%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Associated Families: 14

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020339	Metagenome / Metatranscriptome	224	Y
F021754	Metagenome / Metatranscriptome	217	Y
F023092	Metagenome / Metatranscriptome	211	Y
F023321	Metagenome / Metatranscriptome	210	Y
F024533	Metagenome	205	Y
F031405	Metagenome / Metatranscriptome	182	Y
F039596	Metagenome	163	Y
F047012	Metagenome / Metatranscriptome	150	Y
F053899	Metagenome	140	Y
F054799	Metagenome	139	Y
F055551	Metagenome	138	Y
F057311	Metagenome / Metatranscriptome	136	Y
F081259	Metagenome / Metatranscriptome	114	Y
F091915	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_1000007125	F021754	N/A	MKNKDYTDIAVQKEVLLDYLQVMVVMGDWHGVSDVANDLRELEAKNNNNYKSK
Ga0209085_1000007128	F047012	GGAG	MKRLLFFVIATLMAVAAHAESYRLPFVELQNGVVKIPFVENEWVLGAKRADWLLYLEKGMFSKQNQPMYEFHAVTLYKKPHHNDAIDTDISKIYTYGVLNCQEANLYILFEWYVDVDENMVFKGSHEYGAYTVEMLTPTTARNDVYNQICKDSV
Ga0209085_1000007132	F081259	AGGAGG	MLNKLIQWFIRPQITEIEQYISAHNPKNTADVEMLINEFNYKRKLQCF
Ga0209085_1000007133	F023321	AGGA	MFLNQPQFPVFYTFNDLNRKAEEAAVKTIDFNKQFIDNTLAYFDSITDNQFTTYTKKMVTFNQNTAEDAKKILKSESTKTKAGN
Ga0209085_1000007134	F057311	N/A	MQRKSSKVSQPKLRLEIESKTKFWYPVSRNGWWIKFSTYRDHYILLMIVSKYTAQTIIRYYENEDEAVTFINFITTCNAQDVLESI
Ga0209085_1000007135	F024533	N/A	MPVQKTCPTCNITHTKRGPYCSRSCGNIRVHSEEDKAIRSQKLTEYHQTPEGAATREKSSRIMTAKRKGEDWEEISSDEFAVNIPDVTDYVADYDNTWERAEKW
Ga0209085_1000007138	F053899	GGAGG	MTKEFDKIMDRIKNLTEYEVMVPFPKEFEFGGPVPYDMSISGDKAFVKVIAESIEEATFKANEYFESKYK
Ga0209085_1000007139	F055551	GAGG	MNILKANTNKPWMSNEYETPIPENEEMWSQRIIDEVIEDLFNEMDEENNGNKKEKD
Ga0209085_1000007152	F054799	N/A	MKDLLNLLPKLLEMMPGVVKFLKYIPILMVLAGIGYGVFYWSQNYKDPFKCVNNEIYQQVRVDSNVYQFVGGYCVEGVDERK
Ga0209085_100000717	F039596	AGG	MNNTEIEYAHFLIGSNNKLVCGIDTAIKALRPTARYDMSASGGHFEFTRWEDDAKTEAPTKAEIMAELEYQNKFIEYHQYFLDRASNYPDITVLVNSLWEAMNNSEIPGKGTKFYNMIKEINDKYPKPEGDAPVRPE
Ga0209085_1000007172	F091915	GAGG	MNFALMIYTVVAMSGQNASLVQAHDWRPLTTHYTLESCLNAAKIMGISSERFRCVPSK
Ga0209085_1000007199	F031405	N/A	MMIHTYHKSKKKKVTKKQLQDRQDFERSINSIPLPSGAKFLPTKVKVQKKALFTYRVPRDIVRAESLPDTVKGALTKTGIMKDYHKLSKSDREIVADVASCTAPLHKGNYTYVTEGMNPASFGRKNEVL
Ga0209085_100000775	F023092	N/A	MHKAKNNLVKLVNKYTKEEVFTRDYDDVIREGANEFVRVFTQSNPQRTYLVNRTAFEIDK
Ga0209085_100000780	F020339	GGAG	MSVTTRVAKQIAETNPKYPRAYKYDVVYREFDNMVELIGLVDDPTYDITDFRGREMLFPKKWVTLDVLETSMRVAA