NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208989_10052616

Scaffold Ga0208989_10052616


Overview

Basic Information
Taxon OID3300027738 Open in IMG/M
Scaffold IDGa0208989_10052616 Open in IMG/M
Source Dataset NameForest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1407
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameEl Dorado National Forest, Georgetown, California, USA
CoordinatesLat. (o)38.88Long. (o)-120.64Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050738Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0208989_100526162F050738AGGGGGMTKVVFAACLLMAGVLAGRLALAKDPTQLLLHKGARVGVVNMLDPEVTHFHTSKVLAQSFFKTQPVNWQVDSMLSDAVTQRLTQLELVPVAMGASDSLMRNRDDYFVNSSVAKGLPREVSRAFAQLASSERLDALIVLAPGLNNSSQAGGAVRRGLPDYLRGWGFITGDTNDKPALFNMTQVLLIGIAPDGAMLHAREWGGPYTDEWSDYVPPDNPKQIPQEQLDRLQPPFGRILARQANRVMDWITVAP

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.