Scaffold Ga0208989_10036635

Overview

Basic Information

• Taxon OID: 3300027738
• Scaffold ID: Ga0208989_10036635
• Source Dataset Name: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1700
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: El Dorado National Forest, Georgetown, California, USA
• Coordinates
  • Lat. (^o): 38.88
  • Long. (^o): -120.64

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051833	Metagenome	143	N
F064596	Metagenome	128	N
F069929	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208989_100366351	F064596	GGAG	MTRTASLVWSGVEIIGALFLMLFAAVLVIVGIGFATDAPHNLDGELGKGIFSWLIAIAMTFIAIVLYRHSIRRLRSLPMAWSVVEIILAGFLLFCAGFVGILGFAAAHGGPHAFPADLRIGMVCWLIALAMTIIAIVWFRRSSRRLRSLRELRLHESRSEMGKR
Ga0208989_100366352	F051833	GGA	MRWKLLVGLAITWFGLGITGLFQHAGIIPLDTPLFWTLMGPAVLEVLPAMLFQCTGNCVDGFFVDSAHGPPFLTVPGILLVYVLPSALLARWALRKLLARTPSSSTGHAGKE
Ga0208989_100366353	F069929	GGA	VKIDLVTKRPDGGYTLVLVETGPWIGEQKNQNMQRLGNRIAGCVSAVINGHVARRYPATIGVPLTIQVDSYDTPRLEVDILLAKMQNDFDKSPEIQEELRSGRLTSAILLRHRWSDFASELAKRRPSHRFWHRLKRLFELGVPH