Scaffold Ga0209038_10005551

Overview

Basic Information

• Taxon OID: 3300027737
• Scaffold ID: Ga0209038_10005551
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3724
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004702	Metagenome / Metatranscriptome	427	Y
F019512	Metagenome / Metatranscriptome	229	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209038_100055513	F004702	AGGAGG	MNGRSIRDALFVFVLASAALAVGCGGGAEGKYRDPSGTINAEFKDGKAYVALGAYAVDGTYKIDGNKIVARGDFGPMLPSPLIFTVNKDGTIDGPRDTMIPRLEKVK
Ga0209038_100055514	F019512	AGGAGG	MRVYRATSVISLALALAMLLEPVGCGHSSSDSSADEGIPGLTSADREAQSAAMAELQRHWRKGPDGWTTAIVSGSPYALDHFLRQCRALTIQAMVPQDLSESDKLNGFEWVGRAEFQPTSCREGGGQPGMVLDGMSNVVVNKQSGRWSQWVDFTPGPLRFAREKGRWQFNWDATYLRGTLPGPQDFANAGVQ