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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027737 Open in IMG/M |
| Scaffold ID | Ga0209038_10001087 Open in IMG/M |
| Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8077 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (83.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Calvert Island, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F048424 | Metagenome / Metatranscriptome | 148 | Y |
| F059437 | Metagenome / Metatranscriptome | 134 | Y |
| F082044 | Metagenome / Metatranscriptome | 113 | Y |
| F102028 | Metagenome / Metatranscriptome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209038_100010872 | F082044 | AGG | MSVTLKLVHEEGIRLRQQSAHKIEHKDEKTGEVTPTVDWRFVKHQGSDGRPVEECQQDEDFRRVGNDGKKLKLGTYTVHVTAGMNNLVIERKGKVAPFNFKNPAIRNQVRVQYQKLVDSGRKTKDQKPVHEWKNDGAAKYIPANTFDGVFVGDGQRAILDEMST |
| Ga0209038_100010876 | F102028 | GGA | VSDTENPKYEWGKWPKIKPETVAPLRDGKPDLFNHMPTRFVPLAEAKGRGWKHFWVGEPCVRGHRAARYASNPSHCVDCTRIDGGRLPVYGKGVPELDTPRGVDGFARPYTRRTAAVTAGPPQPSSAEKLFLTKYADLKDFALAADACGRTESEFLAILSWNETFRAAVNRLEEELGIARTQEISEFFDWDDSKRKSFLFTYANTADMKQALRSVGVTNVQFHRELADNADFQRDFDEATQIARAVFDHAAGAAAIKGDAKMLGRVAANFFPEKYGESLKMDLNVKQNLTLDQAHAQLTTILQGLDRQGLLTASGHAEESVVEAEYQVVEPTADAKADPEPEPEDTDRGDDPNSDLVSGS |
| Ga0209038_100010877 | F048424 | GGAG | MILTPELEEVAQRVHVLRDRVLLKILPYVHPTLLTPGIEIHKGVIVAVGYGRRQRRKTAFKQEMDAGAPVIGPGGKVMKFTKSNLSGRTLWFEDGPETGAIIPMTVKPGDVVEFSFRNITLVDFDRIGFPGIGHLAFVWQQAIYSIDPDESLNECLMWQRSAGYDRHNNFMSGEESWTRA |
| Ga0209038_100010879 | F059437 | GGCGG | MVIGNKYLQGQPILPYANVKAYPGNDIFMDLAFVDHTNTPVVPISISIEIDDITNSVVMAGPTTLTPAGAVGTAGVPFTYPAFASSMYLQCLASMWNMTFPYIGSQLCQVGMQFTYTDSVSGQVCTGTSVVAIIELCALATVSGLTY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |