Scaffold Ga0209190_1077191

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1077191
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1592
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018929	Metagenome / Metatranscriptome	232	Y
F020851	Metagenome / Metatranscriptome	221	Y
F034566	Metagenome	174	Y
F054581	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_10771911	F034566	N/A	WVQSFLIVILSTALLFLGGDLKQSRKMILDQSNYCIKYTSDIIASSRLDLIREQDAHSRTVDKANSVIDDIVNRYNSLVARYNKTTGGTNYDPLNTYSYRIRP
Ga0209190_10771912	F054581	AGGA	MCPHCNNKLIPLLYGFVDPKYVDMHKEGLIFLVSTTYHTKNSPTSYCKKCEESFDIKLS
Ga0209190_10771913	F020851	GGA	MSKDLVDLAISMTEIDTAMQLTLEEREAMAKRILDKLKTINLV
Ga0209190_10771916	F018929	GGA	MSLDDMMLKKEIAEILDKASYRIWDTTKVIKNQDYHDGLVKGLKMASNIVSKL