Scaffold Ga0209190_1076698

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1076698
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1600
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010398	Metagenome	304	Y
F013084	Metagenome	274	Y
F018927	Metagenome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_10766981	F013084	N/A	TNAMGILSILGLMEETKNTVLHRGHNVKNWLVLGNDCYALECIDCKMTCMIKEKPLPNEIKASGEALAVNCVKPVKEKKLRKK
Ga0209190_10766982	F018927	AGG	MNKHIEITRHLTVDGTSTYYVVEKSKNSSSIIWNGTSKQAAYQVAYRNARKENTPLYDTLYKAEIDRNGVKHIIPVGNELLEVN
Ga0209190_10766984	F010398	AGGAG	MEISIQGVTKVNYELVIDEDVFNECCEEAGLDPANFKKFTKDEWNELNPHLVQAVVDSESEIDYTEIHAPHTVYADTLTIDDRKHMTTVYYDKNRKTDSFEIM