NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1073304

Scaffold Ga0209190_1073304


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1073304 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1648
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029440Metagenome188N
F072344Metagenome121N
F078721Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0209190_10733041F072344N/AMFRVYLNKCHCKLIIKTLDLHKTIIKGEVNKISLLMMENKKTQIKYNYDFEESFTFRAHSFFNLLCDLEEEHVKRYFNVLQLYPRSDIIVGVKKKLYSLLSFLSGDLNDVLPVSFSSDEVSIIKLSLELYSNLLCGKFEILSKVFEGLSIDLNFESIILRLCENRDLFTNLVDKNSPLNISSNLIYYKGKWAWDMLGVLSGDESGKIGSIPLIKIEEVDDSRRIRY
Ga0209190_10733042F078721GAGGMIVDVSGINKLMDIWGEDCICFFNETETTLINLRNHFEDNNLNCPIEEIKYPYKENSFNNNILLIVNDKKNRDDLKITSRENIDLDV
Ga0209190_10733043F029440GAGMYDLAIKNNKFICVPPRELKKKDIDWKMRPICDRINASDYCWTVFCCQGHLSGIQKGSLPYLVLLCVNEKRPDILNKLYSAFEVDEEYDLNLPLCGPRSNMMLISLGSKDQHFTYISIHFNAQGKNDQDYCVKIMDRFSRTI

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