Scaffold Ga0209190_1037600

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1037600
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2542
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F027417	Metagenome	194	Y
F083901	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_103760012	F027417	N/A	MGYNYRVTFVTDYLTIITNVELELDDTTGNCSGEAYEQAAISGKNNIEDEIGKIDETIINDITVTLILDDEEIELEGEDE
Ga0209190_10376005	F083901	GGAGG	MNQPTKSKSVLTYRTYRKARDRALIRLSHLYPDTYKQLLAIERKFDEKEGKDWTGIDGFANLSVGTHTRANRTPAFGDPADAGEDEGNYGGEA
Ga0209190_10376007	F001477	GGAG	MSRILRFDSKGEPFLGDPPSNIYTIHPKKSPLILLYEVVDEEGIAEWGGNNAEHCMQWLSLAPTGSRVLVSGWESDEEDAHLVGQSLDITDIVRAASL
Ga0209190_10376009	F000821	AGGAGG	MNEEYLSAKANLCLNQAEKDLKENEIAKAIKNLERANSALYRLGLVKEGEADENN