Scaffold Ga0209190_1036381

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1036381
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2597
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014620	Metagenome	261	N
F032279	Metagenome	180	Y
F037730	Metagenome	167	Y
F055728	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_10363811	F032279	N/A	PDMSTTTPTYKPYEALGGFGQVMADIYRYVPPVTTTTPPAPIYRHGDCSWLPALALQAGWQPEQIPQLLKISARESGCCPRRIGGQKVLPDCTPNGFAETTHLSDSGLMMINGVHWKPDHAQYDGLICKQMGICTQEPLLDAFTNLRAALLIYSRVGWSAWDMCNRTKTCK
Ga0209190_10363813	F014620	N/A	MFAPSIGLGGTFERPAINRDIVIIAREAKQTSVDAAIKAKPKTGKKRARVHAYLLGRPATDEEIETALNMSGNTVRPTRGTLVKDGHVIDSGIRRLTRAGNEAIVWRCV
Ga0209190_10363814	F055728	N/A	MRRSYDPHYGSREQLRAQSEHGMKVARERDALKAENAELQEQITELKAIIAYMTEGE
Ga0209190_10363815	F037730	GAG	MKEFNEAQSTNEYLIGELVIARKRNEVLTEHIATLIKQIDKLQDDIKISSQLLNACVAWM