Scaffold Ga0209190_1036314

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1036314
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2600
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003299	Metagenome / Metatranscriptome	495	N
F003327	Metagenome / Metatranscriptome	494	Y
F004234	Metagenome / Metatranscriptome	447	Y
F015420	Metagenome / Metatranscriptome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_10363142	F003299	N/A	MCRLKIMTMKIYKVVFKTFDYWNGPVKLVTRIVEAYDADHVKQLIQKNDDLILLIEEV
Ga0209190_10363143	F003327	N/A	MTEFTQLAREVQDAIANGDYTHQKYLQFREWYFQNYEGSKRNANRDFRMFDLMYGLDVPIKNNDNEDI
Ga0209190_10363144	F004234	N/A	MNFIDLYKNGNQYISNWTTDYDSDVYIAGTIEPFTYNATETDDEWLSLFILSDANLNLLKSKL
Ga0209190_10363145	F015420	N/A	MKKLINYFTPVGEEQIACAKAFIIVTSVILSILFLFTFLEFIL