Scaffold Ga0209190_1025448

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1025448
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3250
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002707	Metagenome	535	Y
F009514	Metagenome	316	N
F034507	Metagenome	174	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_10254482	F002707	AGGGGG	MSQIDALTQCLVLALTAPNDQKAQQASELAEKLAFGLTVDQVEICKFDALEFVGFE
Ga0209190_10254483	F034507	GGA	MNTQKLEWQPLWDAMEANPSEWIETTEKMYWDMLESVPPRAQNSRGFLVGEPLSDNAEGYPIYACFKKSGDNYYAKNLTLSEFRGEI
Ga0209190_10254489	F009514	AGG	MTKQQILALQSIGKGIIEAANLHSTGAPGGVIYSALMSHGATFNQFQQIMSTLERHGFLSHDDDASTYHATEAGLQWANKV