Scaffold Ga0209190_1023039

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1023039
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3454
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001808	Metagenome / Metatranscriptome	631	Y
F003327	Metagenome / Metatranscriptome	494	Y
F004234	Metagenome / Metatranscriptome	447	Y
F015420	Metagenome / Metatranscriptome	255	Y
F045550	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_102303910	F045550	N/A	SVPFMLTKIVALVLASIEVMSINENYKIVKGIDLWQSMKLLFARAKDIKEDLNKLK
Ga0209190_10230393	F003327	N/A	MTEFTQLAIKVQNEIANGEYTHQKYLQFREWYFQNYEGSKRNANRDFAMFDLMYGLDVPIKNNDNEDI
Ga0209190_10230394	F004234	N/A	MNFINLFKRDNTYFSNWTTSYDSDVYISGTIEPFTYDATETDDGDMSLFILSDANLNLLKSKL
Ga0209190_10230395	F015420	N/A	MKRLINYFTPVGAEQIAFAKALMVVVTAVISIVFLFPLLNLLS
Ga0209190_10230398	F001808	N/A	MRYLAIILLLSSCSAQYHLNKAIKKGYTCEQTGDTIRITTLDSIPVIIHDSIVWEKFITTKDTIIKYNTVYVPKTRLEKRIEYKLKVKTIYKDRIVEKAQAKATRPRTRGNLNLLFVGVGIGLLLSYLFKFAKDKVLF