Scaffold Ga0209190_1019237

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1019237
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3862
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003691	Metagenome / Metatranscriptome	473	Y
F008359	Metagenome / Metatranscriptome	334	Y
F008491	Metagenome / Metatranscriptome	332	Y
F025025	Metagenome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_10192371	F003691	N/A	MNSRMTNEFTETAFNTSRNERPIYRNFAKSKLSDCVKPKSMVEFTDFMGRKHIVAVRNNTELKKQMKFFGMLKKESSTIKQIISQYPIKLGKVEKRFLAECKRELKSVLKLNNKQLDIVL
Ga0209190_10192372	F008359	N/A	MKSKVNQKSLYEIKKVKRVMRMKSEGFEPTSFEVYKVSGPNKFRKYFVSRKDAKSFIDGYTDTKMTIGIVKNIMNEIKLK
Ga0209190_10192378	F025025	N/A	MSKIKEIKLGKRGYKAVVKNKKFNFGDGKHIYEVIELSGPKMDKPRIFVDEASVRKYIGEIEVETKMDKLETSLIKNVLSKKDKKELLASKVMEGALVSNKLALDPTYSQFYNGGSISVETTTGNKEDTDK
Ga0209190_10192379	F008491	GAG	MAKKISTKVNYQVTELVNNLNEAATTQSEQKRDFFTTKALYNAKRLSSILSTAKVGAMTLILALGMVACSAPATEVKADSTEASAPVSADTTATQVVDTVEVAK