Scaffold Ga0209190_1010971

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1010971
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5396
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019099	Metagenome	231	Y
F085340	Metagenome	111	Y
F089785	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_10109712	F085340	AGGA	MNDQELMQYWRAVKAPNKEVEQKALEFGRAVYEQAYKEAREEMSHYFYPIVDRRQELKPVLMKALSAMESAYYILKIQPVTPNQEADTLALAIQSVNDALEKLS
Ga0209190_10109713	F019099	GAG	MIIKGKFIKDWDKSKISTAYIPPNRFRVVTWDMGRIQSWLLGQKPLSRNIIERIIK
Ga0209190_10109717	F089785	N/A	MNPTVDQLLDLLLDGDPVAWEISRTPDGLKIVGVMSNGETRHLATVPIKPPESDQDPCR