NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1008348

Scaffold Ga0209190_1008348


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1008348 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6355
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006546Metagenome / Metatranscriptome370Y
F009402Metagenome318Y
F018368Metagenome / Metatranscriptome235N
F033034Metagenome / Metatranscriptome178Y
F045702Metagenome152N

Sequences

Protein IDFamilyRBSSequence
Ga0209190_10083482F045702N/AMTITQTLNSTAGRFTTLVVNKGANTNKFCARITSATEKTVRFYDMNAEANRVVPTSSVVYARSGKTQFGSLRK
Ga0209190_10083485F033034N/AMKVPKLTKKAQDIVNQIMSADAVDIDHGRVDERVYYGQMHLTGEGLECNVNVDGDMGELIISNESLNAAVVSDGIIEIDGEHIPKNEFGDITITLYKLSKINAV
Ga0209190_10083486F018368N/AMTITTLTTRGQKISNQIVSADVIEINQGPFSFTALTESITTEEDKIVLKYEVDGEMCNHEITNDMLNNAHVEDGHIVFAWGTQLSISLYKLAVINAVE
Ga0209190_10083488F006546N/AMKWKYIGNRTGDAKKGEQYIVEIHPYMERYAKEDMPQFIDVEVIQPPRPRSNMKIGDTIKICNPYYEMMKYSHPGFVPVKE
Ga0209190_10083489F009402N/AMKKLDEQFESAGFKYKQTHREDMFAIYERKYINTTKDSHYEAIKIQSHNGMEIAGNKIPPSEYYPSSNSWGRHGYTCITKKDAYIKLDKMMKEDAVNKEAANKKAERKNAK
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