Scaffold Ga0209190_1008301

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1008301
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6377
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014487	Metagenome / Metatranscriptome	262	Y
F081046	Metagenome	114	N
F086811	Metagenome	110	N
F088509	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100830111	F081046	GAG	MTAKTIKYSQRLGDIIRCLPACKYLADQGHEVFFDCLPQYHGIFEMVSYVKVGNKGDVIDLEIWPNKYQQYRFSNKTWTEFVYAHPDINKADPKDILFDKLDDAPAKGFPETYNMVAPFGISQGHKRDPLQIIVEARKKCGGDNFFVLCQEGTEIKGLQTYTAPSILELARAIRGANEFWSIDSGQMAIAAGVRKESKVVYFPQTIEPFDKDNIFIWDSVEIN
Ga0209190_10083015	F014487	GGAG	MKIVLICLFVCSCCPKPEDNNNLLPRYSDMGAAEDAGKAK
Ga0209190_10083018	F086811	N/A	MISPQFKIEDALASLLTPISGLNVFIANRKGLRLFPYATIKASIGSQQIIPYSGVFEISVELNYSDSATRTTQAIFDDNYYSIFSTLYSNNNTLKEKVQDKVTDLKIFMGRITSQAPTIRADKRAWQRGLTLSFIVTPDPTADGTRNYDFSDFLNSFYLGTI
Ga0209190_10083019	F088509	N/A	MISIERQIENGLATALAGISGVNIYKSDTEGQRLLPNLVIQASIGSEEIIPYSGVFRCPATITYATRADTTTRSTFDAKFQEILQVMYQSPNLASVLTTATLKVFLANVASESPDIKSENRTWSKSLSLDISCTSI