NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1006542

Scaffold Ga0209190_1006542


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1006542 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7328
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (38.46%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022372Metagenome / Metatranscriptome214Y
F050981Metagenome / Metatranscriptome144N
F078382Metagenome / Metatranscriptome116N
F083886Metagenome / Metatranscriptome112N
F100656Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100654210F050981GGAGMRWLAIICLSASSVCAQITDDELSKISKEEIVLTIKHLRALTADAIATADRAIASEARMQAKLVDATNALMDSQNQLLKVDQDIHSLQAQTEEQTRIAVGAKADAIKAQRLADHRGNLLGWLGAGLLCIVCLKLTSILPPPYGFLLPVAAIPAGYWLARLLL
Ga0209190_100654211F078382AGGMTLRSAMRQTLDLLVVVLSIFLSRTLWVTIGGLYVVWIVHWSDVATLYTLDNAAQIQAFTQLALCRYGLIGSIVLGYLGFTRGSTGVAGYVIDQLNPKDK
Ga0209190_10065427F022372N/AMSTTITINVAFLTEEQRDAATLLFARSGGWQPLVDGEPNPVSAEAYGVNMLANYLRSGVASQSAYDAQIAAAQEVADLLEGVTVTTPTEFNALFPTPPIITPV
Ga0209190_10065428F083886N/AMLRNEIFGDLWRGSVGIAGSWVAVISSMHEDIDSIAKTAGMILGCLASLAMFVSLCQRIYHNWQTRKWEGVIFKQTDDDLKK
Ga0209190_10065429F100656N/AMTTLKNSLILLALCMLCACEHNRPKPSPAIVSVAQAKASTASASTAVRSAIDESKGTIIDIKRIRTTQDRVDAKSVLILKWLEFQR
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