Scaffold Ga0209190_1006423

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1006423
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7414
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.79%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007169	Metagenome / Metatranscriptome	356	N
F022862	Metagenome / Metatranscriptome	212	N
F024782	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_10064233	F024782	N/A	MFYIENFINHQPNPQTIMIEKTIERLRAYNKWRTGEDDRTMDEAGIQPSQLTADIKTVCDELEKLISIYASRN
Ga0209190_10064234	F022862	N/A	MKFTPQQYELICKTRDEIRDLNAKQHALYDNLTKELNITIYAEDWLFDYIYNEYGSIDDIEARI
Ga0209190_10064236	F007169	N/A	MSYQLPFDFETPEQKEKRLKDWHDQQVKLDKMFEGKSDDYYIYNKYVDQFIDFLPYRLGWGLRGNYNELRWWIKCQYQKFRYGVSDDEVYSLETNIAKYMVPRLQYFKKKGKMGIPMKFLPSNYNNLQDEDREKAEKIGEKEINRILDEMIFAFDYIIDPDKYVTFPKSCSWDIKDKNYFNREKNLEAKQAWDEYTKTCEQLDTRKKQGLQLFVDHMDMLWI