NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1006423

Scaffold Ga0209190_1006423


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1006423 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7414
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.79%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007169Metagenome / Metatranscriptome356N
F022862Metagenome / Metatranscriptome212N
F024782Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_10064233F024782N/AMFYIENFINHQPNPQTIMIEKTIERLRAYNKWRTGEDDRTMDEAGIQPSQLTADIKTVCDELEKLISIYASRN
Ga0209190_10064234F022862N/AMKFTPQQYELICKTRDEIRDLNAKQHALYDNLTKELNITIYAEDWLFDYIYNEYGSIDDIEARI
Ga0209190_10064236F007169N/AMSYQLPFDFETPEQKEKRLKDWHDQQVKLDKMFEGKSDDYYIYNKYVDQFIDFLPYRLGWGLRGNYNELRWWIKCQYQKFRYGVSDDEVYSLETNIAKYMVPRLQYFKKKGKMGIPMKFLPSNYNNLQDEDREKAEKIGEKEINRILDEMIFAFDYIIDPDKYVTFPKSCSWDIKDKNYFNREKNLEAKQAWDEYTKTCEQLDTRKKQGLQLFVDHMDMLWI

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