Scaffold Ga0209190_1004479

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1004479
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9055
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (19.05%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F003714	Metagenome / Metatranscriptome	472	Y
F005588	Metagenome / Metatranscriptome	395	Y
F006659	Metagenome / Metatranscriptome	367	Y
F010765	Metagenome / Metatranscriptome	299	Y
F015597	Metagenome	253	Y
F019449	Metagenome / Metatranscriptome	229	Y
F021107	Metagenome / Metatranscriptome	220	Y
F021297	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100447910	F003714	N/A	MPNAHHPYTETLTFAGRVLPLKRPMAEFAARRLQAILPQIAALNAAGKSQGDAAAALETTVTTLRHWLDITGTTWINVKRRGPYSSRA
Ga0209190_100447912	F010765	N/A	MSALPTPTPDDLPVSFRDIGLGVMIGSASWLIRYFCSTEKQTLGYIFRRTATAGLTSVLVGMAIKGYLSSESLAFAAAGCAGYASPELVDALLARIKAMKVKSPTKGE
Ga0209190_100447913	F019449	N/A	MTTETFTTIVVPGIASLAYFSASVACFIAHRPALAVMWLCYSIANICLLSTVLRK
Ga0209190_100447916	F021107	N/A	MITLILIAVAFAGGFYAGVKNAKSSKVEKAVDIIRALKGK
Ga0209190_100447919	F021297	N/A	MSCNNQVTVSQGNTFAATFTWTPGATGPANLLATTITSTLEDRDFNEYAMAVTIAGDGLSFTVAYAGSTASWALGLARWDIKFVFPGSTVSRSEIFRVNVIDSVTV
Ga0209190_10044793	F015597	N/A	MSDPIEDAFKSLHQGNLLSAKDARIKQLEERLEGMREAGDAIWYCVRHANRVDPAELIEAIEDWQEARNHG
Ga0209190_10044795	F006659	N/A	MKKDTKLPTEYRIIADSSYIVLPDQKVARLLTPTVRNGVTYYNLFVPDYTRMSLADIEATIKAGEVTKSTDSK
Ga0209190_10044798	F000957	N/A	MSNFQHLEGMRNLILEIYEINERILTGDILSPKAAIASTNVKKILNHYHEALHEDGAVKVSLQAYVAAGGWVGIQYSYELDGFEVAGSQVPRRV
Ga0209190_10044799	F005588	N/A	MITTIRPNKMPTLWWLFPWAYARTLHMSANALKAYADRQDQALEIFRGVIEIKDAEIRMLKQRVRDQDDAIIKGTAITPDAYPHE