Scaffold Ga0209190_1004191

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1004191
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9418
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022372	Metagenome / Metatranscriptome	214	Y
F078391	Metagenome	116	N
F095140	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_10041916	F022372	N/A	MSTTITINVAFLTDEQRDAATLLFARSGGWQATVDGEPNPVSAEDYGVTMIAQYLRQRVSEQSSYDAQIAAAQATTDLLDGVSVTTPTEFATIFPTPPIVSPV
Ga0209190_10041917	F078391	N/A	MNDLLPAMGRFFANEWDGFYQRVTVNVSVTTLGILTPLAHAELNMWLQTTIYVSGLIILIWNFWGAQKELKRKRLRDEAATAEWMRVAKAESHFPKRKPNEL
Ga0209190_10041918	F095140	AGGA	MNTKNFAGYGSIVMSLLTALAAAPYSLGEVATIIPPEWKQRVFVAGAIATLILRVIRDNVQSNPPTTPKTEG