Scaffold Ga0209190_1004094

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1004094
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9552
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041193	Metagenome	160	N
F052587	Metagenome / Metatranscriptome	142	N
F052596	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100409411	F052587	AGGA	LINSVQENNIPDNLIMSNKSIILCLITLCVHLLILKFLYSPYNELGIIQGYRIEIDSLNKVNDSLYSDIKKNKVIIDKYTQELNVLENKKQTVIIKYKTKVNEIDTLNNNNLVAEFDSIFSKFNYK
Ga0209190_100409412	F041193	N/A	LTAYSQSLIINNKDTLICFSSDKAKFLAKQYHKAESYYLSDSLCQQQLIFKGNQVNLYKKNEDKLQTIIGNQVTIIKFKDEENKSLTIQMKGLNLEVKKQKRLKGISIIFGVSCLVFALV
Ga0209190_100409415	F052596	N/A	MNYEKFKQIIDLQVAHNNRVDELYALKIDIVEFFDEITRVTELLWEELLTENGDYHLFYYLYEMNGIYGTPDLNEEYKDTKELYDYLIENKGFK