Scaffold Ga0209190_1003984

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1003984
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9706
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (47.37%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016374	Metagenome / Metatranscriptome	247	Y
F030663	Metagenome / Metatranscriptome	184	Y
F044299	Metagenome	154	Y
F089835	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_10039846	F016374	GGAG	MSKGTAMNKEITLTPAGGRFYRAMAFHWVTVAVVMPLLAIAMIAAILNPFWFRDSMFNFVERKINEFTRWRNNMKYRVYLGCDPVVWHTLRGDLK
Ga0209190_10039847	F030663	AGGA	MYQLIFTFLVVTKAGIPGFHIERMSQFRELEDCEKTKTSMIVYMDKLVRENKMFPGVFECQKVQR
Ga0209190_10039848	F044299	GGA	MNQISQYLVSIDRPPYVNGRRVGQATPCVSYGQSSWFISFYDGYTHSNNPVFTDEDGLNAAPTIREYATNLGFEPCTN
Ga0209190_10039849	F089835	AGGA	MRLSPLDERMNADIDALIAKLEAAKTSRTYLQRASLVGKIAEQCQSYEFYWEDRLLSLMD