Scaffold Ga0209190

Basic Information
Taxon OID	3300027736 Open in IMG/M
Scaffold ID	Ga0209190_1003945 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027736 Open in IMG/M

Scaffold ID

Ga0209190_1003945 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9762
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (60.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

9762

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (60.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F004132	Metagenome / Metatranscriptome	451	Y
F007112	Metagenome	357	Y
F011077	Metagenome / Metatranscriptome	295	Y
F084233	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_10039451	F000808	N/A	ALTTSYDGELIHTLRVSDMLEAVNAWTKCVDYGTAKQYATYNLSDPTGKMYTKTFYTNGEVVIK
Ga0209190_100394512	F084233	N/A	MTLTVEIYEMDYSCSPGGVNCWEVSTNDELCTTGFKTAGEALEYVLDKYPNHELQLNVKSLNWYFKEYADEYAV
Ga0209190_100394517	F007112	AGGA	MHTLHYVAVEADNKQEAFDKVVIGLQPNEDGYRLSDWSDWHVVGGGRYSSNAHKENKANPMGGSYTNDPADVIGYAENKEKFQEVTKDILKFRSQNMNRNIVEIKTDSFISQMVDYASEGGRAAWNGDTLMNVYSIKQAAEMLLGSWTCDSGFYDLQEYVSEFEYLDQRLDKPEQAVRQYLVPVDFHF
Ga0209190_100394525	F011077	AGGA	MDTNLTWAEEDVNLWKGWTYSPKNNRYYFNDIGDESLASFWADDFLNQAYL
Ga0209190_10039459	F004132	N/A	LHFTGHGDIIVLTEKEPLMSEVMTQEQLSVPYNPNLLVTYKAIPNTYAAPESPTFMTDKVTDLEWELHQGRTNADRAAERRADIAWLEDQIPEWYDPNYDKEDVLKALAEHFAINPMKQMSVYGTVTFSGTISIPLSEIEDFDLSNVTIDAEVSSYEYEADLTVDDVSLEEN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209190_1003945

Overview

Ecosystem & Geography

Associated Families

Sequences