Scaffold Ga0209190_1003780

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1003780
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9996
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024977	Metagenome	203	Y
F043388	Metagenome	156	N
F067726	Metagenome	125	Y
F103251	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_10037802	F043388	AGG	MAYTDFLNEALDDLVTTLQTISGLRVVNDPRNIAPPCAFVDAPSIESFNYNIVKMTFPVTLISNGPGNLDALRQLLNLTSSLVFKNIAVMSASPKVVTVGGADYAGFELIIPIQAQNG
Ga0209190_100378021	F024977	AGGAG	MNEFQQPINPMRIITGNDEWSFCTPVFAIAISNSHDVEYLTINGNFYTPNKIKFAEMCINGQWIRLETNHLRTPDPSNI
Ga0209190_10037803	F067726	GGA	MDRYIISSIRVGEIGTAFIASPSDDIEWLLEGGFIQRSDTHPSKGAKLATKPDATENKKD
Ga0209190_10037806	F103251	GAGG	MTMEVQGLESTLKALQQIQPEVKKQFFADAKQIVRPAIDEAKNAYQTDYLSGMSRAWAPGGRPLFPWSQPKASKGVAVSTSLSKKQDAVLTIVQKDAAAAIFDMAGRKTSNPLGNALNAFQTPSRVMWRSYEQHAGDIEAEMSKSVDEVMGRISAITKLVIL