Scaffold Ga0209190_1003744

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1003744
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10033
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (27.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047567	Metagenome / Metatranscriptome	149	N
F055532	Metagenome / Metatranscriptome	138	N
F097184	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100374411	F097184	GGAG	MTAVCHVCGAVWAGPTLGRLNHCDSKTRPKIDQTKAHPHKVDKIGGKMLGRTVCECGQPAVRASSCDTGAKVCQRCHDCEIGGYSVRPAKAATDHTYRVRLPRKNL
Ga0209190_100374415	F047567	N/A	MICSLEKTHATKREATAMLAAIVDKISETTWMAATVHRVHMDPHELYEVVKVGKRWHIRATAQHLKAAKALRPKGYGV
Ga0209190_10037444	F055532	N/A	MSQPDLFGALPPKPKQPSKLDLARQAFTEFREVLRASIYLPPTNASDMLRLEEDIQFALTSRFGHGPKNAAQLAALCIRGVDVFMCHEWQDGQCRRCKRISK