Scaffold Ga0209190

Basic Information
Taxon OID	3300027736 Open in IMG/M
Scaffold ID	Ga0209190_1003334 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027736 Open in IMG/M

Scaffold ID

Ga0209190_1003334 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10656
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (80.77%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

10656

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (80.77%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002764	Metagenome	531	Y
F009140	Metagenome / Metatranscriptome	322	Y
F011742	Metagenome	287	N
F012211	Metagenome / Metatranscriptome	282	N
F020138	Metagenome	225	Y
F032955	Metagenome	178	Y
F046258	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100333411	F009140	GGAG	MRLNLTHRTLLKRLSSGPRTMLEMTHSHTDNNSVSFHYQRYLPDLEQFGYVINHQEKWHLTEYGRMEMNRAISGAAMRIENGSVKEIYDGKELRRNVFRRGCYDFLKYPSRFGDNQIYKV
Ga0209190_100333412	F012211	AGGAG	MPTDEERFKYECYAIVQELDPEDISDAIDDSVALVEAIKANNAEDVAAIVMHRVELKVCRRAELRVFDVVKTPWIDDIEELQHYRNLRIERVQKALDERKITAAKMDAPFKEMFDE
Ga0209190_100333413	F046258	GGAG	MKLLTIAIKRVLSFFEIVTLQPSLPILLRDKTPAKKTLPTLAITDPKFVYQSAACTDITHTFEKAKHERLQRLQHDADGNRKQDQGTFPQVSKQKLRRVHG
Ga0209190_100333417	F020138	AGG	MNQQQINRLNAFWQDVEAHKALNPSLPESALVILKSVALDALLAAQDIEQIGVNDANN
Ga0209190_100333418	F011742	AGGAG	MQTIEFVPFDWENDDFNPEIDRIEVDYQWHEADDSVGLIAYCEKTVKWMRFNLQIKDITDELSYADLAYLKHEIKRNDQEIADERT
Ga0209190_100333419	F002764	AGGAG	MKEPEDEAFDELAKRQGDWGLQGSRKHQIIRYAENNARNEVIEEVAQHIEKCSLAFGKDTIQSFAVYVRGMKK
Ga0209190_10033348	F032955	N/A	MNKDQAHEILEQRKQGFAVAQHLVNRALVVSGDLGLACSPCQATRLEGASMAQGEGTGVMSNSLVAWNNNRFDEPHESPI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209190_1003334

Overview

Ecosystem & Geography

Associated Families

Sequences