Scaffold Ga0209190_1003232

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1003232
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10815
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F008741	Metagenome	328	Y
F009142	Metagenome	322	Y
F035218	Metagenome / Metatranscriptome	172	Y
F090073	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100323210	F035218	AGGAG	MPLTKNPSNIDNFLFASGRMKMYRVGLAGSYTKVTGTGGVASIGNTGGFNINLNAGSAANGTSKAGYFDPTAALMTASAGKIDYSKRIRFSIGGMMYLASTNSVIRMVFGGTGNATDAPLAGVDGLTIKGFGVEFALQSSVIQARLIGYNASYLTPTSYTTLTNGFGLASSDNRFFGVVIESDGAGNIYLYGADSQTNPAINIGQTPLLTLTGGPTNDTSTNRFGPEIHCSNSSSTPSATPSAILQSTHWLLDVQ
Ga0209190_100323215	F090073	GAGG	MSDILNEELNATFVRPGRDFKGQPLAEYTEGSRLLMIQAKEKEDSPVYFVWAFLYLHILLAKNRKEAIKLAWNKEAFKESLFDWVSDKTQEDRDMATNIVSSIIDEASKARVSIVSSGGESFSVGNE
Ga0209190_10032323	F003049	N/A	MKNAKQIIGCRKSKKGEDTKGLGMIKFGKSQPCKTKYVKVDITYDDKAKKELFEAGMLALKYDPEAVIEYVIKKALCELVKK
Ga0209190_10032325	F008741	AGGA	VEKTIKYSQRLGDVLRCLPACKYLADQGHEVFFDCFPQYHSVFDLVSYVKSGNKGNVLDLEIWPKKYEAYRKSKRSWTDFVYSHPEIKAADKTSIILDKLDDKPAVGLPENYNLVAAFGNSQGFYRNPLELITKARNDLGKDNFYVMTPPEIQIQGLSTYTAPSVSEMAKAIRGAKDFWAINSTPIVLASVVRRGKPTAFFPQKNEWETDNIFDFDGMFRMD
Ga0209190_10032328	F009142	N/A	MNNSVQINVEDAIAGLLASISGLNIYKTNRIGTKLFPSATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISQEAFDAEYCSIFEAFYSETQPLFTKIQNNIIDTKVYTARITGQTPTIKTAKRAWQRGLKINLICTPSELDDGLRYLDFHEKRNSMYVGVI