Scaffold Ga0209190

Basic Information
Taxon OID	3300027736 Open in IMG/M
Scaffold ID	Ga0209190_1003110 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027736 Open in IMG/M

Scaffold ID

Ga0209190_1003110 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11029
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (17.65%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

11029

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (17.65%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	6
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002843	Metagenome / Metatranscriptome	526	Y
F015720	Metagenome / Metatranscriptome	252	Y
F028149	Metagenome / Metatranscriptome	192	N
F063494	Metagenome / Metatranscriptome	129	N
F078232	Metagenome / Metatranscriptome	116	N
F085631	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100311011	F028149	AGGAG	MASGNVISCKQFQSFLVSQEPVYDKEILKDIRPFDGLIGYYNTGSFDAYSGTTHTFDRFNSVFPNVTGAWENPTGAACTGTPCDTEENKIGWGFTRNTYSLEKQAWGSDLLCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAMELSGYDPLSNTQPGAFACKAGLPAIAFSWVGTGYSVLRVTDTAAAAITAASLGLLTPDILRSRVTRQYFLGAVQAGKDGYDSLQLHTDKDTFRYLSKDNPLLVSSWRFGEFAPAAKEFYKYGFMGFVGDFMVKVLQFPLRFVSTATAGNYRLVLPYRNVTATQGIRSEFNPDYNNAQYQISYINNPRALRVLPFRPEAVNPNMPFLVRDYGGRWKFATNDLGADCAGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVQGACPVIVAGCAADPGDSAQDYNSADPVCPRVIQFTAVADDATNYVIGTTGIMCDDNIVTNAGISSATVALLIVALQARWDAEFGAGSGTWSIVSGNLIQVSGTSCTNVTLEFAI
Ga0209190_100311012	F085631	N/A	MKNTVRVSYRLPIEVAKMLEDEALRARRTKTAVLIIAIEDHVLRCDDERSDWVEKPVDTKRKR
Ga0209190_100311015	F063494	N/A	MSHQPPEIRAAAITQALHGQKAPEHLSPEGKYRFYERLGMLCGTAQATESQLRIALLDATEYDLNCDSEP
Ga0209190_10031104	F015720	N/A	MKNTKTTLAGVGAILIAVGGALRAAFDADPSTNIDIASTIAAVTAGIGLIMAKDADKTPVVPPV
Ga0209190_10031106	F002843	N/A	MIVPVNIVAVQCNQNNSLFVTTGVDYDNSGTIVGSEITSQYTLNPGDSLEGQPVEVVNIANALWTPAVVEAYKAANPVPVVEVSPLSDSLIESPVVIETSDPTN
Ga0209190_10031109	F078232	AGGAGG	MPVLTPQELADTGGCFDCMMPVLQQTMLLSLLQQIQVASTDAARTTASPGGLLTATATAAANPGRRRFVIQNQKTTEHLHLKFGTGCTTTDYHYVLLSAATAGAGASSLTFEGYTGAISVAPVAGSPSYTFAEFV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209190_1003110

Overview

Ecosystem & Geography

Associated Families

Sequences