Scaffold Ga0209190

Basic Information
Taxon OID	3300027736 Open in IMG/M
Scaffold ID	Ga0209190_1002905 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027736 Open in IMG/M

Scaffold ID

Ga0209190_1002905 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11424
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (87.50%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

11424

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (87.50%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015732	Metagenome / Metatranscriptome	252	N
F022415	Metagenome / Metatranscriptome	214	Y
F037719	Metagenome / Metatranscriptome	167	Y
F051133	Metagenome / Metatranscriptome	144	Y
F052598	Metagenome	142	N
F054041	Metagenome / Metatranscriptome	140	Y
F058151	Metagenome / Metatranscriptome	135	Y
F074407	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100290510	F058151	GAG	MELQDKTSISTLVDNVPTDVSGKWVKKEDLYPFASAVADYVLTRVEKNIDDSNL
Ga0209190_100290511	F052598	GAG	MIPTFKLTVTDEFHFDFVYETDNKEEVLDRVALWLAQLDNTPIYNLNIEVN
Ga0209190_100290513	F054041	AGGA	MTTIFTCGHKAKNEDDGGHAISTIAYTRENNRAVDYRTVCDNCYRIYEEEDMILFGETAIEKWLDGE
Ga0209190_100290518	F051133	AGGAG	MKIDRINNHIIELDRMERANQQYKREEDYRKVIEKKNLEMIIAERVERNMRLDRDKGRYIDVDV
Ga0209190_100290525	F022415	AGGAG	MSRMSTLHMIIVDAIACDLSEDLIIDLMVEEGLPREACPEILRVFKQVEAV
Ga0209190_100290527	F015732	AGGA	MTKITNLETAVGIVRNSTDKATALADIQNILGVSRSNAFVYHTKASKILFSANNLDEIVGKVSPQYKKVSESVQGTSSTKKAQKLAEIDAFLANAPTAKGNPFAALGA
Ga0209190_10029056	F074407	N/A	MNNKIKALAIQAGLYVDFNGEPWPKNMTGEDIEAFYEKFANLIVDECAKKVDKVRRQGGWFYGEIIRKEFGFYDKKSP
Ga0209190_10029057	F037719	AGGA	MNEELKALALQAGAPVEVMDQMWFNIFCQQFADLLITIMETE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209190_1002905

Overview

Ecosystem & Geography

Associated Families

Sequences