NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1002670

Scaffold Ga0209190_1002670


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1002670 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11935
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002009Metagenome / Metatranscriptome604Y
F007467Metagenome / Metatranscriptome350Y
F031024Metagenome / Metatranscriptome183N
F065527Metagenome / Metatranscriptome127N
F088506Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100267012F002009GAGMTPPTIAEMGDEAAAVVWRVMGKGSDKSAYGDWLLKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDNNGETATDHLERALVRCLFTLAQIKKEVTRL
Ga0209190_100267014F031024GGAMRKALVTQAFGDEWKKILELTQPRMEAYCKRHQIDFIALEKPLAEPVQYSKSAIGNIMATKGYEQVTFLDADVLVAADCPDIGEDAGVFCAFDEGAFLDRKLAMGKLAGTFGAIIDPRFYVNTGVFVISSKVVGALSMPPLGLLPNHFAEQTWMNIMVHIWNI
Ga0209190_10026703F088506N/AMAMFNFNLDGKKEVVKPMRSYIDIDENGRPKARIYADEYDSVKSNPDFEPYLTGAGRNMQTSQDDFADEMNKARLDDVEARIKRKRVETLKSEEEARKYSGTSNEYPGIDILGRAIGSKTFGQVATSRQQELRKMMEERAGYMGTPEISAPMEEAAPVEQAPSTQNEYINLKSPDGSVQRIKKNAWSSSSKTKPGKKVSEVYLDSGYSIVP
Ga0209190_10026706F065527GAGMKAITMIAVTAMLMASVMGEDDDEGVGIGDFAGGVLGKSAIITGKNTAVTSDGKFICSNGRGFATSDGYYGSNGNQVFGNGKLVVKSKSFFYGSSSSWKNGNSYYDGKKGSWITSKPRAS
Ga0209190_10026708F007467GGCGGVTDKEAWAKFEDGLKDVTSMEEALAWVKKNQPIVEKLTIRSMIRNFNDDISRANKSWRN
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