NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1002605

Scaffold Ga0209190_1002605


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1002605 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12116
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (52.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016374Metagenome / Metatranscriptome247Y
F030663Metagenome / Metatranscriptome184Y
F044299Metagenome154Y
F053886Metagenome140Y
F056408Metagenome / Metatranscriptome137Y
F089835Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100260514F016374N/AMNKEITLTPAGGRFYRAMAFHWLTVAVVMPPLAVAMIAAILNPFWFRDSMFNWVERRVNEFTRWRNNVKYRIYLGCDPVVWHTLRGDIK
Ga0209190_100260515F030663AGGAMYQLIFTFLVVTKAGIPGFHIERMSQFRELEDCEKTRTAMVVYMDQLVKENKMFPGVFECQRVQR
Ga0209190_100260516F044299GGAGMNQVSRYLISIDRPPYVNGRRVGQAMPCQSYGESSWFISFRDGYTHTSDPVFTDEDELNAAPSIIEFATNLGFESCTN
Ga0209190_100260518F056408GGAGMDEAEIAVNERIKQLMAQTLDEKFSHTWSTMTPADLEKFVKHFAELLIRDCADTAYKFDGLTLGQGYTIAKHIKKNYEIEL
Ga0209190_100260520F089835AGGAMRLSPLDERMNTDIDALIAKLEAAKTSRTYLQRAALVGKVAEQCQSYEFYWEDRLYSLMD
Ga0209190_10026054F053886AGGAMNRTLIWVLSFSVLGPVPESGEQAKFKTQEECRAAVVQKREEFRAQNKQIVATCNLSTKG
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